pulsemcp Safe content atomic mcp-remote

TCGA Bioconductor

Bioconductor-based MCP server providing conversational access to TCGA (The Cancer Genome Atlas) data through curatedTCGAData and TCGAutils packages. Exposes tools for listing available cancer types and assays for specific diseases using ellmer framework integration. Uses dry-run approach to efficiently query available datasets without downloading large files. Useful for exploring TCGA data availability, building cancer research workflows, and integrating genomic data access into AI-assisted bioinformatics pipelines.

Cognium trust score

30%

Tier

Unverified

Composite of vulnerability cleanliness, spec conformance, provenance, stability, and usage signals — scanned and weighted by Cognium. Human and agent signals are tracked separately. Last scanned 2026-09-02.

Scan details: Circle-IR · 2026-09-02 · Appeal

View full trust & usage report →

Metadata

Version: 1.0.0
Skill type: atomic
Execution layer: mcp-remote
Category: devops-ci
Source: PulseMCP
Repository: github.com/vjcitn/bioctcgamcp
Author type: human
Last scanned: 2026-09-02
Updated: 2026-09-02

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MCP

Resolve TCGA Bioconductor from your agent

Streamable HTTP transport at https://api.skillsregistry.net/mcp. No auth for read tools. Discovery: .well-known/mcp.json.

One command in your shell — Claude Code wires it up and verifies the connection. Run /mcp in any session to confirm.

claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp

Swap --scope user for --scope project to commit it to .mcp.json.

Your client Same endpoint everywhere; only the config key differs. The full list is in the descriptor.

Claude Desktop · Settings → Connectors → Add custom connector

https://api.skillsregistry.net/mcp

Paste the URL as the connector endpoint. No authentication.

ChatGPT · Settings → Connectors → Create (developer mode) → MCP server URL

https://api.skillsregistry.net/mcp

Authentication: none. Works in chat and deep research — the server exposes the connector search and fetch tools.

Codex CLI · ~/.codex/config.toml

[mcp_servers.skillsregistry]
url = "https://api.skillsregistry.net/mcp"