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Protocols.io

Protocols.io MCP server by Hao-Quan Liu that enables AI assistants to interact with the protocols.io platform for scientific protocol management through comprehensive search, retrieval, and editing capabilities. Built with Python using FastMCP and httpx, the implementation provides tools for searching public protocols by keyword, retrieving detailed protocol information and step-by-step procedures, managing personal protocol collections, and performing CRUD operations including protocol creation, title/description updates, and step management (add, delete, replace). The server requires protocols.io API authentication and supports multiple transport protocols (stdio, HTTP, SSE) with Docker deployment options, making it valuable for researchers managing laboratory protocols, scientists collaborating on experimental procedures, and academic institutions integrating protocol databases into AI-assisted research workflows.

Cognium trust score

65%

Tier

Scanned

Composite of vulnerability cleanliness, spec conformance, provenance, stability, and usage signals — scanned and weighted by Cognium. Human and agent signals are tracked separately. Last scanned 2026-09-02.

Scan details: Circle-IR · 2026-09-02 · Appeal

View full trust & usage report →

Metadata

Version: 1.0.0
Skill type: atomic
Execution layer: mcp-remote
Category: database
Source: PulseMCP
Repository: github.com/hqn21/protocols-io-mcp-server
Author type: human
Last scanned: 2026-09-02
Updated: 2026-09-02

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MCP

Resolve Protocols.io from your agent

Streamable HTTP transport at https://api.skillsregistry.net/mcp. No auth for read tools. Discovery: .well-known/mcp.json.

One command in your shell — Claude Code wires it up and verifies the connection. Run /mcp in any session to confirm.

claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp

Swap --scope user for --scope project to commit it to .mcp.json.

Your client Same endpoint everywhere; only the config key differs. The full list is in the descriptor.

Claude Desktop · Settings → Connectors → Add custom connector

https://api.skillsregistry.net/mcp

Paste the URL as the connector endpoint. No authentication.

ChatGPT · Settings → Connectors → Create (developer mode) → MCP server URL

https://api.skillsregistry.net/mcp

Authentication: none. Works in chat and deep research — the server exposes the connector search and fetch tools.

Codex CLI · ~/.codex/config.toml

[mcp_servers.skillsregistry]
url = "https://api.skillsregistry.net/mcp"