Ensembl
Production-ready MCP server built by Augmented Nature that provides AI assistants with complete access to Ensembl's genomic database through 20+ specialized tools covering gene lookup, sequence retrieval, comparative genomics, variant analysis, and regulatory features. The implementation uses TypeScript with comprehensive input validation and error handling, offering both individual tools (gene search, homolog finding, transcript analysis) and batch processing capabilities for multiple genes or sequences simultaneously. Designed for bioinformatics workflows, the server integrates directly with Ensembl's REST API to support research applications requiring programmatic access to gene annotations, phylogenetic data, variant consequences, and cross-species comparative analysis across all Ensembl-supported organisms.
Composite of vulnerability cleanliness, spec conformance, provenance, stability, and usage signals — scanned and weighted by Cognium. Human and agent signals are tracked separately. Last scanned 2026-09-28.
Scan details: Circle-IR · 2026-09-28 · Appeal
View full trust & usage report →Metadata
- Version
- 1.0.0
- Skill type
- atomic
- Execution layer
- mcp-remote
- Category
- database
- Source
- PulseMCP
- Author type
- human
- Last scanned
- 2026-09-28
- Updated
- 2026-09-28
Use via MCP
Resolve Ensembl from your agent
Streamable HTTP transport at https://api.skillsregistry.net/mcp. No auth for read tools. Discovery: .well-known/mcp.json.
One command in your shell — Claude Code wires it up and verifies the connection. Run /mcp in any session to confirm.
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp--scope user for --scope project to commit it to .mcp.json.