# Cryosparc_mcp_Server

> Cryosparc_mcp_Server — yaswanth169-cryosparc-mcp-server. Use this tool when you need to manage and automate CryoSPARC workflows using natural language commands, solving issues of pipeline complexity and manual intervention. It takes in natural language inputs and outputs pipeline status, reports, and recovery state, enabling seamless workflow management. Ideal for cryo-EM data processing and analysis, particularly when running W1->W2 pipelines and requiring features like pausing, resuming, and reporting.

Canonical page: https://skillsregistry.net/skills/yaswanth169-cryosparc-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/yaswanth169-cryosparc-mcp-server

## Description

An MCP server that enables running CryoSPARC W1->W2 pipelines via natural language, with tools for starting, pausing, resuming, checking status, and generating reports, using persistent state files for recovery.

## Trust

- **Trust score (0–1):** 0.68
- **Verification tier:** scanned
- **Last scanned:** 2026-08-30

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** devops-ci
- **Updated:** 2026-08-30

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/yp629o2l5l)
- **Repository:** <https://github.com/yaswanth169/Cryosparc_mcp_Server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "yaswanth169-cryosparc-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/yaswanth169-cryosparc-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/yaswanth169-cryosparc-mcp-server/pull`

---
SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt