# PomBase MCP Server

> PomBase MCP Server — ubcd-ibfg-pombase-mcp. Use this tool when you need to access comprehensive fission yeast gene information or integrate PomBase data into your analysis. It solves problems related to gene function, annotation, and interaction analysis by providing structured API calls for querying gene summaries, GO annotations, and other relevant data. The tool accepts specific query inputs and returns detailed gene information outputs, making it ideal for use cases involving bioinformatics research and data integration.

Canonical page: https://skillsregistry.net/skills/ubcd-ibfg-pombase-mcp  
JSON: https://api.skillsregistry.net/v1/skills/ubcd-ibfg-pombase-mcp

## Description

Enables AI agents to query the fission yeast PomBase database for gene summaries, GO annotations, phenotypes, orthologs, domains, and interactions via structured API calls.

## Trust

- **Trust score (0–1):** 0.70
- **Verification tier:** verified
- **Last scanned:** 2026-09-03

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** database
- **Updated:** 2026-09-03

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/s27lckesm0)
- **Repository:** <https://github.com/ubcd-ibfg/pombase-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "ubcd-ibfg-pombase-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/ubcd-ibfg-pombase-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/ubcd-ibfg-pombase-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt