# reactome-db-mcp

> Use this tool when you need to directly query and explore a locally hosted Reactome database, solving problems of data discovery and retrieval for biochemical pathway analysis. It provides a SQL interface for read-only queries and schema discovery, with ergonomic helpers for easier navigation. Ideal for use cases requiring programmatic access to Reactome data, such as bioinformatics research and systems biology applications.

Canonical page: https://skillsregistry.net/skills/tc2fh-reactome-db-mcp  
JSON: https://api.skillsregistry.net/v1/skills/tc2fh-reactome-db-mcp

## Description

Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.

## Trust

- **Trust score (0–1):** 0.69
- **Verification tier:** scanned
- **Last scanned:** 2026-08-30

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** database
- **Updated:** 2026-08-30

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/qjlja9dofr)
- **Repository:** <https://github.com/tc2fh/reactome-db-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "tc2fh-reactome-db-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/tc2fh-reactome-db-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/tc2fh-reactome-db-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt