# Protein Structure MCP Server

> Use this tool when you need to retrieve detailed protein structure information, such as 3D predictions, by searching UniProt databases using protein names and accessing corresponding AlphaFold data. It solves problems related to protein structure analysis, prediction, and visualization, providing outputs like accession numbers and direct links to structural models. Ideal for bioinformatics and proteomics research, this tool streamlines the process of finding and exploring protein structures.

Canonical page: https://skillsregistry.net/skills/soffelcopter-protein-structure-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/soffelcopter-protein-structure-mcp-server

## Description

Searches UniProt by protein name to find accession numbers and retrieves detailed protein structure information from AlphaFold, including direct links to 3D structural predictions.

## Trust

- **Trust score (0–1):** 0.92
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** search
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/gzxbo5ge7o)
- **Repository:** <https://github.com/soffelcopter/protein_structure_MCP_server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "soffelcopter-protein-structure-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/soffelcopter-protein-structure-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/soffelcopter-protein-structure-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt