# Infercnv-MCP

> Use this tool when you need to analyze scRNA-Seq data for Copy Number Variations (CNVs) and visualize the results through interactive plots. It solves problems related to CNV inference and data visualization, providing insights into genomic variations at the single-cell level. The tool accepts scRNA-Seq data as input and outputs chromosome heatmaps, UMAP, and t-SNE plots for further analysis.

Canonical page: https://skillsregistry.net/skills/scmcphub-infercnv-mcp  
JSON: https://api.skillsregistry.net/v1/skills/scmcphub-infercnv-mcp

## Description

Provides a natural language interface for inferring Copy Number Variations (CNVs) from scRNA-Seq data using the infercnvpy framework. It enables users to perform data preprocessing, CNV inference, and visualization through chromosome heatmaps, UMAP, and t-SNE plots.

## Trust

- **Trust score (0–1):** 1.00
- **Verification tier:** verified
- **Last scanned:** 2026-09-19

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** maps-location
- **Updated:** 2026-09-19

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/luhbtebv2i)
- **Repository:** <https://github.com/scmcphub/infercnv-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "scmcphub-infercnv-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/scmcphub-infercnv-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/scmcphub-infercnv-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt