# mcp-opentreeoflife

> mcp-opentreeoflife — pipeworx-io-mcp-opentreeoflife. Use this tool when you need to manage and reconcile phylogenetic tree data, solving problems of data integration and tree conflict resolution in evolutionary biology research. It takes phylogenetic tree files as input and outputs a reconciled tree, providing a command-line interface for git-based version control. Ideal for use in bioinformatics and evolutionary biology applications where accurate tree reconstruction is crucial.

Canonical page: https://skillsregistry.net/skills/pipeworx-io-mcp-opentreeoflife  
JSON: https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-opentreeoflife

## Description

Open Tree of Life MCP.

## Trust

- **Trust score (0–1):** 0.99
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** container
- **Runtime environment:** vm
- **License:** MIT
- **Updated:** 2026-09-28

## Source

- **Source listing:** [GitHub](https://github.com/pipeworx-io/mcp-opentreeoflife)

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pipeworx-io-mcp-opentreeoflife"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-opentreeoflife` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-opentreeoflife/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt