# mcp-metabolights

> mcp-metabolights — pipeworx-io-mcp-metabolights. Use this tool when you need to access and retrieve metabolomics data from EBI's MetaboLights repository, enabling querying and retrieval of study data for research and analysis purposes. It solves problems related to metabolomics data discovery and access, providing a gateway to a comprehensive repository of studies. The tool accepts query inputs and returns relevant metabolomics data as output.

Canonical page: https://skillsregistry.net/skills/pipeworx-io-mcp-metabolights  
JSON: https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-metabolights

## Description

Provides access to EBI's MetaboLights metabolomics study repository via an MCP gateway, enabling querying and retrieval of metabolomics data.

## Trust

- **Trust score (0–1):** 0.70
- **Verification tier:** verified
- **Last scanned:** 2026-08-29

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-08-29

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/baz4xw6fyu)
- **Repository:** <https://github.com/pipeworx-io/mcp-metabolights>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pipeworx-io-mcp-metabolights"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-metabolights` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-metabolights/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt