# mcp-ena

> mcp-ena — pipeworx-io-mcp-ena. Use this tool when you need to access and retrieve raw sequencing data, assemblies, and annotated sequences from the European Nucleotide Archive (ENA). It solves problems related to searching, downloading, and verifying large genomic datasets by providing searchable records and downloadable FASTQ/BAM files with checksums. It is ideal for use cases involving genomic research, data analysis, and bioinformatics, accepting inputs such as organism, study, or platform, and outputting relevant sequence data and metadata.

Canonical page: https://skillsregistry.net/skills/pipeworx-io-mcp-ena  
JSON: https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-ena

## Description

European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies and annotated sequence, searchable by organism, study, platform, collection country or date, with the FASTQ/BAM download URLs and checksums for every run.

## Trust

- **Trust score (0–1):** 0.99
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** container
- **Runtime environment:** vm
- **License:** MIT
- **Updated:** 2026-09-28

## Source

- **Source listing:** [GitHub](https://github.com/pipeworx-io/mcp-ena)

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pipeworx-io-mcp-ena"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-ena` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-ena/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt