# mcp-biomodels

> mcp-biomodels — pipeworx-io-mcp-biomodels. Use this tool when you need to access and explore curated mathematical models of biological systems, such as those related to specific pathways, diseases, or organisms. It solves problems related to model discovery, reuse, and validation by providing a searchable repository of executable models in various formats like SBML, CellML, and BioPAX. With inputs like pathway, disease, or gene, and outputs including model files and associated research papers, it facilitates research and analysis in systems biology and related fields.

Canonical page: https://skillsregistry.net/skills/pipeworx-io-mcp-biomodels  
JSON: https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-biomodels

## Description

BioModels — the public repository of curated, executable mathematical models of biological systems (SBML, CellML, BioPAX and more), searchable by pathway, disease, organism, gene or author, with the model files themselves and the paper each model came from.

## Trust

- **Trust score (0–1):** 0.97
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** container
- **Runtime environment:** vm
- **License:** MIT
- **Updated:** 2026-09-28

## Source

- **Source listing:** [GitHub](https://github.com/pipeworx-io/mcp-biomodels)

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pipeworx-io-mcp-biomodels"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-biomodels` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-biomodels/pull`

---
SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt