# mcp-bindingdb

> mcp-bindingdb — pipeworx-io-mcp-bindingdb. Use this tool when you need to access a comprehensive database of measured binding affinities between proteins and small molecules, helping you solve problems in molecular interactions and drug discovery. It provides binding affinity data as output, taking protein and small molecule identifiers as input. Utilize it in contexts where understanding protein-ligand interactions is crucial, such as pharmacology and biochemistry research.

Canonical page: https://skillsregistry.net/skills/pipeworx-io-mcp-bindingdb  
JSON: https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-bindingdb

## Description

BindingDB — measured protein/small-molecule binding affinities.

## Trust

- **Trust score (0–1):** 0.99
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** container
- **Runtime environment:** vm
- **License:** MIT
- **Updated:** 2026-09-28

## Source

- **Source listing:** [GitHub](https://github.com/pipeworx-io/mcp-bindingdb)

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pipeworx-io-mcp-bindingdb"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-bindingdb` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pipeworx-io-mcp-bindingdb/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt