# PDBe MCP Servers

> Use this tool when you need to access and query protein structure data, perform advanced searches, or retrieve structural biology information. It provides seamless access to the Protein Data Bank in Europe (PDBe) API, enabling AI clients to retrieve specific data through targeted searches. Ideal for use cases requiring detailed protein structure analysis, such as bioinformatics research or molecular modeling.

Canonical page: https://skillsregistry.net/skills/pdbeurope-pdbe-mcp-servers  
JSON: https://api.skillsregistry.net/v1/skills/pdbeurope-pdbe-mcp-servers

## Description

Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data.

## Trust

- **Trust score (0–1):** 0.93
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** search
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/r61w8kxcfw)
- **Repository:** <https://github.com/PDBeurope/PDBe-MCP-Servers>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "pdbeurope-pdbe-mcp-servers"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/pdbeurope-pdbe-mcp-servers` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/pdbeurope-pdbe-mcp-servers/pull`

---
SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt