# vmd-mcp

> Use this tool when you need to analyze molecular dynamics through a user-friendly interface, solving the problem of complex Tcl scripting for tasks like loading structures and computing RMSD. It enables natural language control of VMD2, accepting text inputs and producing visual outputs like rendered images. Ideal for users who want to streamline their molecular dynamics analysis workflow without requiring extensive scripting knowledge.

Canonical page: https://skillsregistry.net/skills/omararias-gaguancela-vmd-mcp  
JSON: https://api.skillsregistry.net/v1/skills/omararias-gaguancela-vmd-mcp

## Description

Enables control of VMD2 for molecular dynamics analysis through natural language, allowing users to load structures, set representations, measure distances, compute RMSD, and render images without Tcl scripting.

## Trust

- **Trust score (0–1):** 0.60
- **Verification tier:** unverified

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** media
- **Updated:** 2026-05-07

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/rdxdiiotye)
- **Repository:** <https://github.com/OmarArias-Gaguancela/vmd-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "omararias-gaguancela-vmd-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/omararias-gaguancela-vmd-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/omararias-gaguancela-vmd-mcp/pull`

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