# Nipoppy MCP Server

> Use this tool when you need to interact with neuroimaging data in a standardized format, such as listing files and managing clinical datasets organized according to the Brain Imaging Data Structure (BIDS) standard. It solves problems related to data organization and accessibility in neuroimaging research, providing a convenient interface for AI agents to work with complex datasets. With inputs including BIDS-structured data and outputs including file listings and dataset metadata, it is ideal for use cases involving neuroimaging data analysis and processing.

Canonical page: https://skillsregistry.net/skills/nipoppy-mcp  
JSON: https://api.skillsregistry.net/v1/skills/nipoppy-mcp

## Description

An interface for the Nipoppy neuroimaging framework that enables AI agents to list files and manage clinical datasets. It facilitates interaction with neuroimaging data organized according to the Brain Imaging Data Structure (BIDS) standard.

## Trust

- **Trust score (0–1):** 0.69
- **Verification tier:** scanned
- **Last scanned:** 2026-09-02

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** ai-ml
- **Updated:** 2026-09-02

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/tbzecpyxfn)
- **Repository:** <https://github.com/nipoppy/mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "nipoppy-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/nipoppy-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/nipoppy-mcp/pull`

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