# data-aggregator-mcp

> Use this tool when you need to streamline research data collection across multiple repositories and literature sources. It solves problems of data discovery, deduplication, and access by fetching datasets from various platforms, including Zenodo, DataCite, and NCBI archives, and linking them to relevant literature through a normalized model. The tool takes in queries and DOIs as inputs and outputs aggregated datasets, resolved citations, and downloadable files.

Canonical page: https://skillsregistry.net/skills/musharna-data-aggregator-mcp  
JSON: https://api.skillsregistry.net/v1/skills/musharna-data-aggregator-mcp

## Description

Searches and fetches research datasets across Zenodo, DataCite (Dryad/Figshare/Dataverse/OSF), NCBI omics archives (GEO/SRA/BioProject), and the literature (PubMed/OpenAIRE) through one normalized model — deduplicating by DOI, expanding organism queries with NCBI Taxonomy synonyms, and bridging papers to the datasets they produced. Resolves citations and open-access full text, and downloads files.

## Trust

- **Trust score (0–1):** 0.66
- **Verification tier:** scanned
- **Last scanned:** 2026-09-01

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** ai-ml
- **Updated:** 2026-09-01

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/giiu7uw580)
- **Repository:** <https://github.com/musharna/data-aggregator-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "musharna-data-aggregator-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/musharna-data-aggregator-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/musharna-data-aggregator-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt