# Oh My KEGG

> Use this tool when you need to access and analyze the KEGG database for bioinformatics workflows, metabolic pathway analysis, or drug discovery research. It provides comprehensive searching and retrieval of detailed information across KEGG databases, including pathways, genes, and compounds, with advanced analysis capabilities like ortholog finding and drug interaction checking. With streamable HTTP transport and batch processing, it offers a efficient interface for inputs like gene identifiers and outputs like detailed pathway information.

Canonical page: https://skillsregistry.net/skills/martinuslee-oh-my-kegg  
JSON: https://api.skillsregistry.net/v1/skills/martinuslee-oh-my-kegg

## Description

Provides comprehensive access to the KEGG (Kyoto Encyclopedia of Genes and Genomes) database through a FastMCP server implementation with streamable HTTP transport. Offers specialized tools for searching and retrieving detailed information across all major KEGG databases including pathways, genes, compounds, reactions, enzymes, diseases, drugs, modules, and orthology groups. Features advanced analysis capabilities like cross-organism ortholog finding, drug-drug interaction checking, batch processing, and identifier conversion between KEGG and external databases. Designed for bioinformatics workflows, metabolic pathway analysis, drug discovery research, and systems biology applications.

## Trust

- **Trust score (0–1):** 1.00
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** database
- **Updated:** 2026-09-28

## Source

- **Source listing:** [PulseMCP](https://www.pulsemcp.com/servers/martinuslee-oh-my-kegg)
- **Repository:** <https://github.com/martinuslee/oh-my-kegg-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "martinuslee-oh-my-kegg"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/martinuslee-oh-my-kegg` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/martinuslee-oh-my-kegg/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt