# PubChem MCP Server

> Use this tool when you need to access a vast chemical database for comprehensive searches, structure analysis, and property calculations. It solves problems related to chemical research, bioactivity data retrieval, and safety information gathering by providing 30 specialized tools for detailed analysis. The PubChem MCP Server takes chemical structures or identifiers as inputs and outputs relevant data, such as bioactivity and molecular properties, making it ideal for use in chemical research, drug discovery, and toxicology contexts.

Canonical page: https://skillsregistry.net/skills/k-lordbodin7-pubchem-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/k-lordbodin7-pubchem-mcp-server

## Description

Enables comprehensive access to PubChem's chemical database with over 110 million compounds. Supports chemical searches, structure analysis, bioactivity data, safety information, and molecular property calculations through 30 specialized tools.

## Trust

- **Trust score (0–1):** 0.97
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** database
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/cplrw3acpf)
- **Repository:** <https://github.com/k-lordbodin7/PubChem-MCP-Server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "k-lordbodin7-pubchem-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/k-lordbodin7-pubchem-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/k-lordbodin7-pubchem-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt