# BioOpenMCP

> Use this tool when you need to automate bioinformatics workflows, such as quality control, trimming, and alignment, with background execution and status checking. BioOpenMCP solves problems related to tedious manual processing of bioinformatics data, enabling efficient analysis and reporting. It takes in bioinformatics data and tool parameters as input, and outputs processed data and reports, ideal for use in research and analysis contexts where natural language integration is beneficial.

Canonical page: https://skillsregistry.net/skills/jeskwek-openbiomcp  
JSON: https://api.skillsregistry.net/v1/skills/jeskwek-openbiomcp

## Description

BioOpenMCP enables users to run bioinformatics tools like FastQC, Cutadapt, and STAR with background execution and status checking. It integrates with Claude Desktop to perform quality control, trimming, alignment, and reporting via natural language.

## Trust

- **Trust score (0–1):** 0.60
- **Verification tier:** unverified

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** data-analytics
- **Updated:** 2026-05-25

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/t4vy0qfg1c)
- **Repository:** <https://github.com/JesKwek/OpenBioMCP>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "jeskwek-openbiomcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/jeskwek-openbiomcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/jeskwek-openbiomcp/pull`

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