# vcf_mcp_server

> vcf_mcp_server — jda-vcf-mcp-server. Use this tool when you need to explore and analyze Variant Calling Format (VCF) files, as it provides an MCP Server to facilitate interaction with large-scale genomic data using LLM agents, accepting VCF files as input and outputting insights and summaries. This tool solves problems related to genomic data analysis, such as variant calling and annotation, by providing a scalable and efficient interface. It is particularly useful in bioinformatics and genomics research contexts where VCF files need to be explored and analyzed.

Canonical page: https://skillsregistry.net/skills/jda-vcf-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/jda-vcf-mcp-server

## Description

MCP Server to facilitate exploring Variant Calling Format (VCF) files using LLM agents

## Trust

- **Trust score (0–1):** 0.92
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** container
- **Runtime environment:** vm
- **License:** MIT
- **Updated:** 2026-09-28

## Source

- **Source listing:** [GitHub](https://github.com/jda/vcf_mcp_server)

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "jda-vcf-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/jda-vcf-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/jda-vcf-mcp-server/pull`

---
SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt