# protein-design-mcp

> Use this tool when you need to design and engineer proteins for specific functions or applications, solving problems in fields like biochemistry and pharmacology. The protein-design-mcp server takes in sequence or structure inputs and outputs designed protein sequences or structures, leveraging computational tools to streamline the design process. Ideal for use cases requiring rapid prototyping and testing of protein designs, this tool enables LLM agents to access advanced protein design capabilities.

Canonical page: https://skillsregistry.net/skills/jasonkim8652-protein-design-mcp  
JSON: https://api.skillsregistry.net/v1/skills/jasonkim8652-protein-design-mcp

## Description

An MCP server that gives LLM agents access to computational protein design tools.

## Trust

- **Trust score (0–1):** 0.89
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** ai-ml
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/gms3ubpfln)
- **Repository:** <https://github.com/jasonkim8652/protein-design-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "jasonkim8652-protein-design-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/jasonkim8652-protein-design-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/jasonkim8652-protein-design-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt