# PubTator-MCP-Server

> Use this tool when you need to annotate and mine relationships in biomedical literature, as it provides convenient access to PubTator3 functionality through the MCP interface, accepting input queries and returning annotated text and relationship outputs. It solves problems related to information retrieval and knowledge discovery in biomedical texts. Ideal for use cases requiring automated literature analysis and insight extraction.

Canonical page: https://skillsregistry.net/skills/jackkuo666-pubtator-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/jackkuo666-pubtator-mcp-server

## Description

🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.

## Trust

- **Trust score (0–1):** 0.94
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/o73lb2h19m)
- **Repository:** <https://github.com/JackKuo666/PubTator-MCP-Server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "jackkuo666-pubtator-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/jackkuo666-pubtator-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/jackkuo666-pubtator-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt