# PLUMED2 MCP Server

> Use this tool when you need to automate and optimize molecular dynamics simulations by generating and validating PLUMED input files. It solves problems related to simulation setup and optimization, allowing for more efficient and accurate results. The tool takes molecular dynamics simulation parameters as input and outputs optimized PLUMED input files, making it ideal for use in computational chemistry and biophysics workflows.

Canonical page: https://skillsregistry.net/skills/iflow-mcp-phelanshao-plumed2-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/iflow-mcp-phelanshao-plumed2-mcp-server

## Description

Enables AI assistants to generate, validate, and optimize PLUMED input files for molecular dynamics simulations using a set of MCP tools.

## Trust

- **Trust score (0–1):** 1.00
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** file-system
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/kwil9b8lb6)
- **Repository:** <https://github.com/iflow-mcp/phelanshao-plumed2-mcp-server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "iflow-mcp-phelanshao-plumed2-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/iflow-mcp-phelanshao-plumed2-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/iflow-mcp-phelanshao-plumed2-mcp-server/pull`

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