# CellTypist MCP

> Use this tool when you need to automate cell type annotation in single-cell RNA sequencing (scRNA-seq) analysis, solving problems of manual annotation and enabling efficient cell type identification. It takes scRNA-seq data as input and outputs annotated cell types, utilizing natural language interfaces for training and annotation. Ideal for use in bioinformatics and genomics research, particularly when working with large scRNA-seq datasets.

Canonical page: https://skillsregistry.net/skills/hyennnnnnn-celltypist-mcp  
JSON: https://api.skillsregistry.net/v1/skills/hyennnnnnn-celltypist-mcp

## Description

Enables automated cell type annotation in scRNA-seq analysis using CellTypist models, with tools for listing, downloading, training, and annotating cell types via natural language.

## Trust

- **Trust score (0–1):** 0.69
- **Verification tier:** scanned
- **Last scanned:** 2026-08-31

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-08-31

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/jdmvuvmxnh)
- **Repository:** <https://github.com/hyennnnnnn/celltypist-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "hyennnnnnn-celltypist-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/hyennnnnnn-celltypist-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/hyennnnnnn-celltypist-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt