# GenePattern MCP Server

> Use this tool when you need to integrate bioinformatics capabilities into your AI workflow, enabling the execution of bioinformatics modules and management of cloud jobs through natural language inputs. It solves problems related to streamlining bioinformatics analysis and job management, providing outputs such as results and job status updates. Ideal for use cases where seamless interaction between AI coding assistants and bioinformatics tools is required.

Canonical page: https://skillsregistry.net/skills/genepattern-genepattern-mcp  
JSON: https://api.skillsregistry.net/v1/skills/genepattern-genepattern-mcp

## Description

Bridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.

## Trust

- **Trust score (0–1):** 0.68
- **Verification tier:** scanned
- **Last scanned:** 2026-08-31

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-08-31

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/njerfkzfzr)
- **Repository:** <https://github.com/genepattern/genepattern-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "genepattern-genepattern-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/genepattern-genepattern-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/genepattern-genepattern-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt