# galaxy-mcp

> galaxy-mcp — galaxyproject-galaxy-mcp. Use this tool when you need to integrate AI assistants with the Galaxy bioinformatics platform, enabling seamless interaction with Galaxy instances to search and execute tools, manage workflows, and access other features. It solves problems related to workflow automation, tool execution, and data analysis in bioinformatics. The galaxy-mcp tool accepts inputs such as workflow definitions and tool parameters, and outputs results and execution status, providing a programmatic interface for AI agents to leverage Galaxy's capabilities.

Canonical page: https://skillsregistry.net/skills/galaxyproject-galaxy-mcp  
JSON: https://api.skillsregistry.net/v1/skills/galaxyproject-galaxy-mcp

## Description

MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.

## Trust

- **Trust score (0–1):** 0.68
- **Verification tier:** scanned
- **Last scanned:** 2026-08-30

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** search
- **Updated:** 2026-08-30

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/cl0n5sp5b4)
- **Repository:** <https://github.com/galaxyproject/galaxy-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "galaxyproject-galaxy-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/galaxyproject-galaxy-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/galaxyproject-galaxy-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt