# MCP-GMX-VMD

> Use this tool when you need to streamline molecular dynamics workflows and visualize simulation results in 3D. It integrates GROMACS simulations with VMD visualization, allowing for setup, execution, and analysis through natural language inputs, and produces visual outputs for enhanced understanding. This tool is ideal for researchers and scientists requiring efficient and intuitive molecular dynamics simulation and visualization capabilities.

Canonical page: https://skillsregistry.net/skills/egtai-gmx-vmd-mcp  
JSON: https://api.skillsregistry.net/v1/skills/egtai-gmx-vmd-mcp

## Description

Integrates GROMACS molecular dynamics simulations with VMD visualization, enabling setup, execution, analysis, and 3D visualization of molecular dynamics workflows through natural language.

## Trust

- **Trust score (0–1):** 0.20
- **Verification tier:** scanned
- **Last scanned:** 2026-09-01

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-01

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/e7stqf8qsn)
- **Repository:** <https://github.com/egtai/gmx-vmd-mcp>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "egtai-gmx-vmd-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/egtai-gmx-vmd-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/egtai-gmx-vmd-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt