# EBI Bioinformatics Tools

> Use this tool when you need to perform bioinformatics analysis, such as genomic or proteomic data processing, and manage jobs remotely. It solves problems related to data analysis, job submission, and management in bioinformatics, providing a scalable and reliable infrastructure. The tool accepts bioinformatics data and job parameters as input and returns analysis results, enabling AI agents to integrate bioinformatics capabilities into their workflows.

Canonical page: https://skillsregistry.net/skills/ebi-tools-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/ebi-tools-mcp-server

## Description

Provides access to EMBL-EBI bioinformatics tools through the Job Dispatcher infrastructure. Enables AI agents to submit and manage bioinformatics analysis jobs. Built with Cloudflare Workers for remote deployment.

## Trust

- **Trust score (0–1):** 0.91
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** cloud-infra
- **Updated:** 2026-09-28

## Source

- **Source listing:** [PulseMCP](https://www.pulsemcp.com/servers/ebi-tools-mcp-server)
- **Repository:** <https://github.com/quentincody/ebi-tools-mcp-server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "ebi-tools-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/ebi-tools-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/ebi-tools-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt