# anndata-mcp-workshop

> Use this tool when you need to interact with annotated data matrices for single-cell genomics, enabling querying and manipulation of AnnData objects. It solves problems related to data analysis and visualization in single-cell genomics by providing a standardized interface via the Model Context Protocol. This tool is ideal for use cases involving complex data matrices, accepting AnnData objects as input and producing manipulated or queried data as output.

Canonical page: https://skillsregistry.net/skills/dschaub95-anndata-mcp-workshop  
JSON: https://api.skillsregistry.net/v1/skills/dschaub95-anndata-mcp-workshop

## Description

Enables interaction with AnnData objects via the Model Context Protocol, allowing querying and manipulation of annotated data matrices for single-cell genomics.

## Trust

- **Trust score (0–1):** 0.70
- **Verification tier:** verified
- **Last scanned:** 2026-08-31

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-08-31

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/nv1pzr5s4q)
- **Repository:** <https://github.com/dschaub95/anndata-mcp-workshop>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "dschaub95-anndata-mcp-workshop"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/dschaub95-anndata-mcp-workshop` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/dschaub95-anndata-mcp-workshop/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt