# mcp-omics

> Use this tool when you need to retrieve and integrate large amounts of -omics data from various sources, such as PDB, ChEMBL, and UniProt, to facilitate research and analysis in fields like bioinformatics and genomics. It solves problems related to data accessibility and compatibility by providing a unified interface for querying and retrieving data. The tool accepts queries as input and returns relevant -omics data as output, making it ideal for use cases involving data mining, annotation, and visualization.

Canonical page: https://skillsregistry.net/skills/colbyford-mcp-omics  
JSON: https://api.skillsregistry.net/v1/skills/colbyford-mcp-omics

## Description

A Model Context Protocol server that enables retrieval of -omics data from sources like PDB, ChEMBL, UniProt, PubChem, and HUGO.

## Trust

- **Trust score (0–1):** 0.70
- **Verification tier:** verified
- **Last scanned:** 2026-09-03

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-03

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/z0dtehjolu)
- **Repository:** <https://github.com/colbyford/mcp-omics>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "colbyford-mcp-omics"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/colbyford-mcp-omics` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/colbyford-mcp-omics/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt