# BioQC-MCP

> Use this tool when you need to perform comprehensive bioinformatics quality control on sequencing data, automating tasks such as FastQC and MultiQC analysis, and generating interactive visualizations from HTML reports. It solves problems related to data quality assessment, report generation, and visualization, providing insights into sequencing data integrity. The tool accepts sequencing data as input and outputs detailed quality control reports and visualizations.

Canonical page: https://skillsregistry.net/skills/babajan-b-bioqc-mcp  
JSON: https://api.skillsregistry.net/v1/skills/babajan-b-bioqc-mcp

## Description

A professional MCP server for comprehensive bioinformatics quality control, providing automated FastQC/MultiQC analysis, HTML report parsing, and advanced data visualization for sequencing data.

## Trust

- **Trust score (0–1):** 0.67
- **Verification tier:** scanned
- **Last scanned:** 2026-08-31

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-08-31

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/bguofzjdmk)
- **Repository:** <https://github.com/Babajan-B/BioQC-MCP>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "babajan-b-bioqc-mcp"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/babajan-b-bioqc-mcp` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/babajan-b-bioqc-mcp/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt