# ProteinAtlas MCP Server

> Use this tool when you need to access comprehensive protein data, such as expression and subcellular localization, to inform research or analysis. The ProteinAtlas MCP Server provides a robust interface for querying and retrieving data from the Human Protein Atlas, solving problems related to protein function and pathology. It accepts specific queries and returns detailed information about proteins, making it ideal for use cases in biomedical research and proteomics.

Canonical page: https://skillsregistry.net/skills/augmented-nature-proteinatlas-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/augmented-nature-proteinatlas-mcp-server

## Description

A comprehensive Model Context Protocol (MCP) server for accessing Human Protein Atlas data, providing information about protein expression, subcellular localization, pathology, and more.

## Trust

- **Trust score (0–1):** 0.97
- **Verification tier:** verified
- **Last scanned:** 2026-09-19

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-19

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/khs62ses82)
- **Repository:** <https://github.com/Augmented-Nature/ProteinAtlas-MCP-Server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "augmented-nature-proteinatlas-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/augmented-nature-proteinatlas-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/augmented-nature-proteinatlas-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt