# NCBI Datasets MCP Server

> Use this tool when you need to access and manipulate large genomic, taxonomic, and biological datasets. It provides 31 specialized tools for data operations, solving problems related to data retrieval, analysis, and integration. The NCBI Datasets MCP Server takes in API requests and returns comprehensive data outputs, ideal for use cases in bioinformatics, genomics, and biomedical research.

Canonical page: https://skillsregistry.net/skills/augmented-nature-ncbi-datasets-mcp-server  
JSON: https://api.skillsregistry.net/v1/skills/augmented-nature-ncbi-datasets-mcp-server

## Description

Provides comprehensive access to the NCBI Datasets API, enabling genomic, taxonomic, and biological data operations through 31 specialized tools.

## Trust

- **Trust score (0–1):** 0.69
- **Verification tier:** scanned
- **Last scanned:** 2026-09-01

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-01

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/fbxod0znej)
- **Repository:** <https://github.com/Augmented-Nature/NCBI-Datasets-MCP-Server>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "augmented-nature-ncbi-datasets-mcp-server"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/augmented-nature-ncbi-datasets-mcp-server` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/augmented-nature-ncbi-datasets-mcp-server/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt