# encode-toolkit

> Use this tool when you need to manage and analyze genomic data from ENCODE Project experiments, as it provides a comprehensive toolkit for searching, downloading, tracking, and analyzing functional genomics experiments. The encode-toolkit offers a user-friendly interface for inputs such as experiment queries and outputs like downloadable data and analysis results. Ideal for researchers and scientists working with genomic data, this tool streamlines the analysis process and facilitates discovery in functional genomics.

Canonical page: https://skillsregistry.net/skills/ammawla-encode-toolkit  
JSON: https://api.skillsregistry.net/v1/skills/ammawla-encode-toolkit

## Description

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

## Trust

- **Trust score (0–1):** 0.64
- **Verification tier:** scanned
- **Last scanned:** 2026-09-19

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** search
- **Updated:** 2026-09-19

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/exijc1e76w)
- **Repository:** <https://github.com/ammawla/encode-toolkit>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "ammawla-encode-toolkit"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/ammawla-encode-toolkit` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/ammawla-encode-toolkit/pull`

---
SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt