# Biolink MCP Server

> Use this tool when you need to access and query large-scale biomedical data, such as biological entities and associations, to solve problems in life sciences, healthcare, and research. The Biolink MCP Server takes natural language inputs and returns relevant data and knowledge graphs as outputs. It is ideal for use cases that require integrating biomedical data into AI applications, such as disease diagnosis, drug discovery, and personalized medicine.

Canonical page: https://skillsregistry.net/skills/ag2-mcp-servers-biolink-api  
JSON: https://api.skillsregistry.net/v1/skills/ag2-mcp-servers-biolink-api

## Description

An MCP server that provides access to Monarch Initiative's biomedical data through the Biolink API, enabling agents to query biological entities, associations, and knowledge graphs using natural language.

## Trust

- **Trust score (0–1):** 0.94
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** other
- **Updated:** 2026-09-28

## Source

- **Source listing:** [Glama](https://glama.ai/mcp/servers/h6jx3g5vfs)
- **Repository:** <https://github.com/ag2-mcp-servers/biolink-api>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "ag2-mcp-servers-biolink-api"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/ag2-mcp-servers-biolink-api` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/ag2-mcp-servers-biolink-api/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt