# Nextflow Developer Tools

> Use this tool when you need to streamline Nextflow development and testing workflows, or automate tasks like building, testing, and executing Nextflow pipelines. It solves problems like manual workflow management and provides inputs like repository access and test configurations, with outputs including execution results and logs. Ideal for developers working on Nextflow pipelines who want to interact with their local repository directly from an AI assistant interface.

Canonical page: https://skillsregistry.net/skills/adamrtalbot-nextflow  
JSON: https://api.skillsregistry.net/v1/skills/adamrtalbot-nextflow

## Description

Nextflow Developer Tools MCP provides a suite of tools for Nextflow development and testing, built with FastMCP. It enables AI assistants to interact with a local Nextflow repository to perform tasks like building from source, running tests (integration, specific, and plugin tests), executing the development version, and managing the development directory. The implementation includes comprehensive logging, error handling, and environment variable configuration, making it particularly valuable for developers working on Nextflow pipelines who want to streamline their workflow without leaving their AI assistant interface.

## Trust

- **Trust score (0–1):** 0.86
- **Verification tier:** verified
- **Last scanned:** 2026-09-28

## Facts

- **Version:** 1.0.0
- **Skill type:** atomic
- **Execution layer:** mcp-remote
- **Runtime environment:** api
- **Category:** devops-ci
- **Updated:** 2026-09-28

## Source

- **Source listing:** [PulseMCP](https://www.pulsemcp.com/servers/adamrtalbot-nextflow)
- **Repository:** <https://github.com/adamrtalbot/mcp-nextflow>

## Use it

Resolve this record through the SkillsRegistry MCP server (no auth, read-only):

```
claude mcp add --transport http --scope user skillsregistry https://api.skillsregistry.net/mcp
```

```json
{
  "jsonrpc": "2.0",
  "id": 1,
  "method": "tools/call",
  "params": {
    "name": "get_skill",
    "arguments": {
      "slug": "adamrtalbot-nextflow"
    }
  }
}
```

REST: `GET https://api.skillsregistry.net/v1/skills/adamrtalbot-nextflow` · pull for local use: `GET https://api.skillsregistry.net/v1/skills/adamrtalbot-nextflow/pull`

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SkillsRegistry indexes agent skills from public registries and GitHub. Skills we have analysed are scanned with Circle-IR and scored on six dimensions; each listing states its scan coverage. More: https://skillsregistry.net/llms.txt